The Best Hotels Closest to San Diego Natural History Museum in San Diego for 2026

The entrance to the Natural History Museum with a grand staircase leading up to the doors.

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Our top choices for San Diego Natural History Museum hotels

A narrow, enclosed walkway with wooden railings and a metal grid barrier, leading to a building entrance.

A modern bedroom with a large bed, a nightstand, a wall-mounted lamp, and a window with curtains.

A modern reception desk with a glass top, a large window offering a view, and a potted plant.

An outdoor seating area with sofas and chairs, a wooden staircase, and potted plants.

1. City24 Hotel Little Italy Mission Hills

2.3 km from San Diego Natural History Museum

Donavin

NT$3,778

NT$5,369 total

includes taxes & fees

Nov 2 - Nov 3

A hotel room with a herringbone-patterned floor, a bed, a chair, and curtains with room numbers.

A modern office space with a reception desk, seating area, and plants.

A modern lounge area with a blue sofa, yellow armchair, and a coffee table with a book and a potted plant.

2. Stay Classy Hostel

East Village, 2.3 km from San Diego Natural History Museum

Dylan

NT$2,113

NT$2,403 total

includes taxes & fees

Oct 27 - Oct 28

A spacious lounge area with a sofa, a coffee table, and a bar with stools.

A spacious bar area with high ceilings and a central island, surrounded by wicker furniture and pendant lighting.

A reception desk with 'CITY INSIDERS' signage, a flat-screen TV, and a plant on the left.

A modern lobby with a herringbone-patterned wall, a central chandelier, and a seating area with a sunburst-patterned backdrop.

3. Marriott Vacation Club®, San Diego

1.8 km from San Diego Natural History Museum

Veronica Dangerfield

NT$4,695

NT$5,443 total

includes taxes & fees

Nov 9 - Nov 10

A rooftop pool with lounge chairs and a city skyline in the background.

A modern lobby with seating areas, large windows, and indoor plants.

A high-rise building with a view of a harbor and sailboats.

A modern building with a sign reading "kasa little Italy" and a glass entrance.

4. Kasa Little Italy San Diego

2.3 km from San Diego Natural History Museum

Nirmeen

NT$6,219

NT$9,597 total

includes taxes & fees

Oct 28 - Oct 29

A bar area with a glass ceiling, a central bar counter, and multiple stools.

A large swimming pool with lounge chairs and umbrellas, surrounded by palm trees and a building with a striped facade.

A checkered floor with round tables and chairs, a patterned ceiling, and large windows.

A luxurious interior with a large chandelier, patterned sofas, and a view of a cityscape through a large window.

5. Lafayette Hotel & Club

2.6 km from San Diego Natural History Museum

Paul

NT$8,900

NT$10,230 total

includes taxes & fees

Nov 3 - Nov 4

A luxurious room with a grand piano, plush blue sofas, ornate chandeliers, and elegant decor.

A luxurious room with ornate chandeliers, a grand staircase, and plush seating.

A luxurious lobby with a grand chandelier, plush blue sofas, and ornate decor.

A fountain with multiple water jets in a courtyard with seating and potted plants.

6. Westgate Hotel

2.3 km from San Diego Natural History Museum

Arlet

NT$4,960

NT$6,885 total

includes taxes & fees

Nov 8 - Nov 9

A modern bar area with a curved counter, multiple bar stools, and a large window offering a view of the cityscape.

A spacious lobby with a high ceiling, a large sectional sofa, multiple seating areas, and a modern chandelier.

A spacious lobby with large windows, curved ceiling, and comfortable seating areas.

A rooftop lounge area with outdoor seating, a pool, and umbrellas.

7. Omni San Diego Hotel at the Ballpark

Gaslamp Quarter, 3 km from San Diego Natural History Museum

Crystal M

NT$5,296

NT$7,614 total

includes taxes & fees

Nov 22 - Nov 23

A modern bedroom with a brick wall, a bed, a desk, and a seating area.

A cafe with outdoor seating, a sign reading "INFUSED DRINKS NATURE'S KITCHEN," and a "BREAKFAST @ Cafe21" sign.

A modern living room with a brick wall, a flat-screen TV, a round red rug, and a seating area with a sofa and chairs.

A modern bathroom with a sink, mirror, and a bed with a red pillow.

8. Keating Hotel By At Mine Hospitality

East Village, 2.3 km from San Diego Natural History Museum

Audrey

NT$1,265

NT$3,998 total

includes taxes & fees

Oct 28 - Oct 29

A rooftop lounge with a view of the city and ocean, featuring a sofa, chairs, and round tables.

A harbor with boats, a large building, and a parking area.

A modern hotel with a prominent yellow and blue facade, large windows, and a well-lit entrance area with palm trees.

A cruise ship docked at a port with a large shipyard and military vessel in the background.

9. Springhill Suites San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Edgar

NT$5,510

NT$6,403 total

includes taxes & fees

Nov 23 - Nov 24

A restaurant with outdoor seating, brick walls, and decorative lighting.

A spacious lobby with a bar area, seating arrangements, and a large chandelier.

A spacious lobby with a high ceiling, large windows, and a central chandelier.

A vintage car parked in front of a building with a sign that reads "Horton Grand Hotel."

10. The Horton Grand, Downtown/Gaslamp Quarter

Marina District, 2.8 km from San Diego Natural History Museum

Kelane

NT$4,401

NT$6,010 total

includes taxes & fees

Nov 22 - Nov 23

A rooftop terrace with outdoor seating, a view of the city, and a large window overlooking the harbor.

A hotel room with a large window offering a city view, a beige sofa with a red pillow, a floor lamp, and a small white table.

A dining area with round tables, chairs, and floral centerpieces.

A hotel room with a large window offering a view of a marina with boats and a cityscape.

11. Residence Inn by Marriott San Diego Downtown/Bayfront

2.8 km from San Diego Natural History Museum

Chen

NT$6,163

NT$7,147 total

includes taxes & fees

Nov 22 - Nov 23

A multi-level interior with a staircase, wooden doors, and a balcony with plants.

An outdoor dining area with tables and orange umbrellas, surrounded by buildings including the WM. PENN HOTEL.

A kitchen area with stainless steel appliances, a coffee machine, and a counter with various kitchen tools.

A kitchen area with stainless steel appliances, a coffee machine, and a variety of kitchen utensils. There is a sign above the counter that reads "gaslamp hostel SAN DIEGO".

12. Gaslamp Hostel

Gaslamp Quarter, 2.4 km from San Diego Natural History Museum

Karin

NT$3,374

NT$3,838 total

includes taxes & fees

Nov 1 - Nov 2

A modern interior with a round table, two chairs, a hanging lamp, and a view of urban buildings through large windows.

A modern kitchen with a built-in washer, a coffee maker, and a large window with a view of buildings.

A modern interior with a long wooden table, blue bar stools, a sofa, and large windows offering a view of the street.

A modern living room with a black leather sofa, two round tables, and a dining table with chairs. A large window offers a view of city buildings.

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 2.5 km from San Diego Natural History Museum

Nathan

NT$5,026

NT$6,961 total

includes taxes & fees

Nov 9 - Nov 10

A hotel entrance with a stone archway, multiple windows, and potted plants.

A cozy lounge area with wooden furniture, a fireplace, and lush tropical plants.

A long dining table set for a meal with chairs on both sides, a centerpiece with flowers, and a room with art on the walls and a large window.

A spacious living room with a high ceiling, multiple seating areas, and abundant indoor plants.

14. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

Alisha

NT$6,488

NT$7,522 total

includes taxes & fees

Nov 15 - Nov 16

A narrow hotel room with a kitchenette, a dining area, and a bed.

A modern kitchen with white cabinets, a black refrigerator, and a microwave.

A modern kitchen with a dining area, wooden floors, and a large mirror.

A modern living room with a dining area, a coffee machine, and a TV on the wall.

15. The Artifact Inn

East Village, 2.3 km from San Diego Natural History Museum

Chris

NT$2,406

NT$6,889 total

includes taxes & fees

Oct 27 - Oct 28

An aerial view of a resort with multiple swimming pools, lounge areas, and palm trees.

A bar area with a long counter, multiple stools, and hanging wicker lamps.

An outdoor patio area with tables and chairs, a fire pit, and string lights.

A modern hotel with a prominent circular tower and a glass facade.

16. Marriott Marquis San Diego Marina

Marina District, 3.1 km from San Diego Natural History Museum

Thomas Roy

NT$9,291

NT$12,313 total

includes taxes & fees

Nov 24 - Nov 25

An outdoor dining area with a long table and chairs, a street view, and a building with a 'P' parking sign.

A cozy restaurant with brick walls, wooden tables, and chairs. There are candles on the tables, and a chandelier hangs from the ceiling.

A multi-story hotel with a modern architectural design, featuring a prominent entrance and a well-lit street view.

A reception area with a brick wall, palm tree artwork, and surfboards on display.

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

Gaslamp Quarter, 2.8 km from San Diego Natural History Museum

david

NT$4,683

NT$5,430 total

includes taxes & fees

Nov 22 - Nov 23

A grand lobby with marble floors, a chandelier, and ornate doors.

A hotel room with a large bed, a window with blinds, a bedside table with a lamp, and a framed picture on the wall.

A rooftop terrace with outdoor seating, umbrellas, and a view of the city skyline.

A multi-story building with a prominent corner entrance, multiple windows, and a flag on top.

18. Gaslamp Plaza Suites

Gaslamp Quarter, 2.2 km from San Diego Natural History Museum

George

NT$4,401

NT$5,006 total

includes taxes & fees

Oct 27 - Oct 28

An outdoor bar area with seating and a pool.

An outdoor seating area with modern furniture and a bar.

A modern rooftop terrace with a large bathtub, seating area, and a view of the city skyline.

A Hard Rock Hotel with a prominent Hard Rock Cafe sign, a large marquee, and a modern building facade.

19. Hard Rock Hotel San Diego

Gaslamp Quarter, 2.9 km from San Diego Natural History Museum

Alexander

NT$5,053

NT$7,433 total

includes taxes & fees

Nov 22 - Nov 23

A cityscape at dusk with high-rise buildings and a bridge in the distance.

A rooftop pool area with lounge chairs and umbrellas, surrounded by modern buildings and a cityscape at sunset.

A modern bar area with a curved counter, bar stools, and a seating area with tables and chairs.

A modern hotel lobby with a wooden reception desk, a patterned wall, and a long corridor leading to a bright area with a view.

20. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 2 km from San Diego Natural History Museum

Nicole

NT$4,960

NT$5,751 total

includes taxes & fees

Nov 19 - Nov 20

View all properties

Compare popular hotels close to San Diego Natural History Museum

Property	Property class	Guest rating
City24 Hotel Little Italy Mission Hills	9.6 Exceptional 235 reviews	View
Stay Classy Hostel	9.6 Exceptional 981 reviews	View
Marriott Vacation Club®, San Diego	9.4 Exceptional 1,256 reviews	View
Kasa Little Italy San Diego	9.6 Exceptional 554 reviews	View
Lafayette Hotel & Club	9.4 Exceptional 2,109 reviews	View

Top San Diego Natural History Museum Hotel Reviews

Handlery Hotel

10/10 Excellent

"Clean"

The Sofia Hotel

10/10 Excellent

"The staff was incredibly helpful and kind! We stayed for my birthday and they made sure to accommodate all my requests!!"

Hard Rock Hotel San Diego

8/10 Good

"The Beds need to be replaced, they were quite worn out"

Wyndham San Diego Bayside

10/10 Excellent

"Aurora at front desk was amazing. Parking is just not convenient and very expensive"

Little Italy Inn - Limited Service Apart Hotel

8/10 Good

"This hotel is steps away from little Italy. Perfect for visiting restaurants. Not far from the airport and San Diego zoo. It’s in a building with a gated entrance. The building is a bit dated but the room was clean and perfect size for a couple. We only stayed for the weekend but it was the perfect base to visit little Italy, La Jolla and the zoo. Beds and pillows were comfortable. No turn down service but you can get new towels as often as needed. Mini fridge in room. Shower pressure was amazing."

Best Western Seven Seas

10/10 Excellent

"Great place to stay, I enjoyed staying here. Everything was to my liking"

Holiday Inn Express San Diego Downtown by IHG

10/10 Excellent

"Love it. Cheap and nice. Make sure to add the parking!"

Marriott Vacation Club®, San Diego

10/10 Excellent

"Clean, super friendly staff as well"

Other attractions near San Diego Natural History Museum

Fleet Science Center

Discover science through exhibits that will delight the entire family. Watch an IMAX film at San Diego’s museum and planetarium.

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A blue sign with yellow text reading "SPANISH ART CENTER" above a tiled wall.

Spanish Village Art Center

Enjoy an outing to Spanish Village Art Center during your stay in San Diego. Discover the area's top-notch restaurants and its acclaimed theater scene.

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A detailed model of a town with a church, train tracks, and a bridge.

San Diego Model Railroad Museum

You can spend time studying the exhibits at San Diego Model Railroad Museum in San Diego. Stroll along the area's seaside or experience its fascinating museums.

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A symmetrical garden with a central reflecting pool, palm trees, and classical architecture.

Casa de Balboa

You can learn about the history of San Diego when you stop by Casa de Balboa. Stroll along the area's beautiful beaches or experience its fascinating museums.

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A gallery with classical paintings on display.

Museum of Photographic Arts

Visit this museum to journey through the history of the photography medium, which both captures the real world and transforms it into art.

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A desert landscape with large cacti and sparse trees.

Desert Garden

No other garden is as natural to San Diego as this slightly secluded area. Stroll through this green space to see plant species not commonly found in other parks.

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A garden with a pond, colorful flowers, palm trees, and a large building with a dome.

Botanical Building

Discover thousands of plants inside the historic centerpiece of San Diego’s Balboa Park, which was originally built for the 1915 Panama–California Exposition.

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A museum interior with classical paintings, a central bench, and a pink wall.

Timken Museum of Art

View a priceless collection of masterpieces from Europe, the U.S. and Russia in this gorgeous community museum, known as San Diego’s jewel box of art.

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Frequently asked questions

What's the area like around San Diego Natural History Museum?

San Diego Natural History Museum is located in an area of San Diego known for its beautiful ocean views, array of dining options, and popular zoo. If you're looking for a convenient place to stay, check out the 102 hotels and other accommodations you'll find within a mile.

What's the best place to stay close to San Diego Natural History Museum?

The Neon Elm Hotel is one of the top choices for your stay based on our traveler data, and this hotel offers free WiFi and in-room refrigerators. It's located just a short 1 mi (1.5 km) from San Diego Natural History Museum. Other good choices within a few miles include Wyndham San Diego Bayside and Best Western Seven Seas.

How many hotels can I expect to find near San Diego Natural History Museum?

Expedia has 102 hotels and other accommodations within a mile from San Diego Natural History Museum.

If I need to cancel the hotel reservation for my stay near San Diego Natural History Museum, will I receive a refund?

Yes! The majority of room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before the scheduled arrival. If you have a reservation that's non-refundable, you might still have the option to cancel and be given a refund within a 24-hour period of your booking. Put your dates in and click on "Search", then use the "fully refundable" filter to review the best deals near San Diego Natural History Museum.

Where can I learn more about changing or cancelling my trip in the area near San Diego Natural History Museum?

To find more details about picking new dates or cancelling your stay near San Diego Natural History Museum, go to https://www.expedia.com/service/.

What can I see and do near San Diego Natural History Museum?

San Diego Air and Space Museum, Maritime Museum of San Diego, and USS Midway Museum feature a variety of fascinating exhibits to see while you're in town. Explore landmarks like Hotel del Coronado, Mission Basilica San Diego de Alcala, and Casa de Balboa. You can check out the local talent at Old Globe Theater, San Diego Civic Theatre, and The Rady Shell at Jacobs Park.

Find hotels near San Diego Natural History Museum, San Diego from NT$2,403

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for San Diego Natural History Museum hotels

1. City24 Hotel Little Italy Mission Hills

2. Stay Classy Hostel

3. Marriott Vacation Club®, San Diego

4. Kasa Little Italy San Diego

5. Lafayette Hotel & Club

6. Westgate Hotel

7. Omni San Diego Hotel at the Ballpark

8. Keating Hotel By At Mine Hospitality

9. Springhill Suites San Diego Downtown/Bayfront

10. The Horton Grand, Downtown/Gaslamp Quarter

11. Residence Inn by Marriott San Diego Downtown/Bayfront

12. Gaslamp Hostel

13. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

14. Granger Hotel Gaslamp Quarter, A Member Of Design Hotels

15. The Artifact Inn

16. Marriott Marquis San Diego Marina

17. Residence Inn by Marriott San Diego Downtown/Gaslamp Quarter

18. Gaslamp Plaza Suites

19. Hard Rock Hotel San Diego

20. Courtyard by Marriott San Diego Downtown Little Italy

Compare popular hotels close to San Diego Natural History Museum

Top San Diego Natural History Museum Hotel Reviews

Handlery Hotel

The Sofia Hotel

Hard Rock Hotel San Diego

Wyndham San Diego Bayside

Little Italy Inn - Limited Service Apart Hotel

Best Western Seven Seas

Holiday Inn Express San Diego Downtown by IHG

Marriott Vacation Club®, San Diego

Other attractions near San Diego Natural History Museum

Fleet Science Center

Spanish Village Art Center

San Diego Model Railroad Museum

Casa de Balboa

Museum of Photographic Arts

Desert Garden

Botanical Building

Timken Museum of Art

Frequently asked questions

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