Find Boutique Hotels in Shinjuku

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

Tonight
Dec 27 - Dec 28
Tomorrow
Dec 28 - Dec 29
Next weekend
Jan 2 - Jan 4
In two weeks
Jan 9 - Jan 11

Our top choices for Shinjuku boutique hotels

Executive lounge
Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1077)
"We had an extra ordinary staying, we were enjoyed so much, Tnx"
United States
Efraim
Hotel Chinzanso Tokyo
Lobby
The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1001)
"Service was exceptional and the hotel itself is amazing! Definitely recommend and will stay again happily! "
United States
Param
The price is NT$3,104
NT$3,756 total
Jan 5 - 2026/1/6
The Gate Hotel Kaminarimon by Hulic
1 bedroom, down comforters, minibar, in-room safe
The Capitol Hotel Tokyu

The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1003)
"Exceptional Great hotel, great staff and fantastic location "
Canada
Sherif
The price is NT$15,356
NT$19,425 total
Jan 6 - 2026/1/7
The Capitol Hotel Tokyu
Lunch and dinner served
The Peninsula Tokyo

The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.4 out of 10, Exceptional, (1002)
"The room interior is old but clean."
United States
Dae Sik
The price is NT$19,274
NT$24,461 total
Jan 4 - 2026/1/5
The Peninsula Tokyo
Front of property
Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1001)
"Excellent hotel"
United States
Rodney
The price is NT$4,964
NT$5,461 total
Jan 4 - 2026/1/5
Solaria Nishitetsu Hotel Ginza
Exterior
Shangri-La Tokyo

Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (599)
"really nice location and great service"
United States
xue
The price is NT$19,073
NT$24,207 total
Jan 11 - 2026/1/12
Shangri-La Tokyo
Executive lounge
Palace Hotel Tokyo

Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1001)
"Staff was excellent, property and views are beautiful and serene in the middle of Tokyo, Highly recommended. "
United States
Elaine
The price is NT$18,849
NT$23,844 total
Jan 4 - 2026/1/5
Palace Hotel Tokyo
Spa
The Tokyo Station Hotel

The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1001)
"Great location and good breakfast!"
United States
Samantha C
The price is NT$11,599
NT$14,673 total
Jan 9 - 2026/1/10
The Tokyo Station Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Price trends for hotels in Shinjuku

Less expensive
More expensive
Next month
January
November
NT$3,663
Month
Price
January
NT$3,663
February
NT$3,925
March
NT$4,987
April
NT$5,234
May
NT$4,553
June
NT$4,113
July
NT$4,015
August
NT$4,101
September
NT$4,000
October
NT$4,773
November
NT$5,242
December
NT$5,171
Price trend information excludes taxes and fees and is based on base rates for a nightly stay for 2 adults found in the last 7 days on our site and averaged for commonly viewed hotels in Shinjuku.

Top Shinjuku Hotel Reviews

Shinjuku Prince Hotel

Shinjuku Prince Hotel

10/10 Excellent
"Small room, but this is Tokyo afterall! Beautifully clean, quiet and efficiently laid out. Reception staff and concierge were very helpful and friendly. Location is great, although some additional detail on the website on how to get from Shinjuku station to the hotel would be welcome (maybe a map or info on which exit from the station etc)."
Jeffrey 2-night trip
Posted 3 days ago
Shinjuku Prince Hotel
Shinjuku Granbell Hotel

Shinjuku Granbell Hotel

10/10 Excellent
"Wonderful "
Dakota 6-night trip
Posted 4 days ago
Shinjuku Granbell Hotel

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping, and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower, and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea®, and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for getting to and around Shinjuku. The closest major airport is Haneda Airport (HND), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station, and Higashi-shinjuku Station.

Explore a world of travel with Expedia