Find Boutique Hotels in San Ysidro, CA

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Check availability on San Ysidro Boutique Hotels

Tonight
Dec 26 - Dec 27
Tomorrow
Dec 27 - Dec 28
This weekend
Dec 26 - Dec 28
Next weekend
Jan 2 - Jan 4

Our top choices for San Ysidro boutique hotels

Exterior
Hercor Hotel - Urban Boutique

Hercor Hotel - Urban Boutique

Hercor Hotel - Urban Boutique
3.0 star property
Chula Vista
8.6 out of 10, Excellent, (1335)
"Nice breakfast "
United States
Marcos
The price is NT$2,644
NT$2,913 total
includes taxes & fees
Dec 28 - Dec 29
Hercor Hotel - Urban Boutique
Property entrance
The Bristol Hotel San Diego

The Bristol Hotel San Diego

The Bristol Hotel San Diego
3.5 star property
Downtown San Diego
8.6 out of 10, Excellent, (1469)
"I loved my stay here"
United States
José
The Bristol Hotel San Diego
Presidential Suite, 2 Bedrooms | Living room | 36-inch LCD TV with digital channels, TV, pay movies
Alma San Diego Downtown, a Tribute Portfolio Hotel

Alma San Diego Downtown, a Tribute Portfolio Hotel

Alma San Diego Downtown, a Tribute Portfolio Hotel
4.0 star property
Downtown San Diego
9.0 out of 10, Wonderful, (880)
"Friendly staff throughout stay and clean rooms"
United States
Alvin
The price is NT$3,395
NT$5,212 total
includes taxes & fees
Jan 4 - 2026/1/5
Alma San Diego Downtown, a Tribute Portfolio Hotel
Outdoor pool, sun loungers
Westgate Hotel

Westgate Hotel

Westgate Hotel
4.5 star property
Downtown San Diego
9.0 out of 10, Wonderful, (1002)
"Everything about the Hotel including staff was fantastic"
Canada
Donna
The price is NT$5,050
NT$6,948 total
includes taxes & fees
Dec 28 - Dec 29
Westgate Hotel
Lobby
Hotel Republic San Diego, Autograph Collection

Hotel Republic San Diego, Autograph Collection

Hotel Republic San Diego, Autograph Collection
4.0 star property
Downtown San Diego
9.0 out of 10, Wonderful, (1198)
"Modern decor, great restaurant, convenient to all attractions in San Diego."
United States
Nelson
The price is NT$5,169
NT$7,451 total
includes taxes & fees
Jan 4 - 2026/1/5
Hotel Republic San Diego, Autograph Collection
Exterior
Hotel Indigo San Diego-Gaslamp Quarter by IHG

Hotel Indigo San Diego-Gaslamp Quarter by IHG

Hotel Indigo San Diego-Gaslamp Quarter by IHG
4.0 star property
Downtown San Diego
8.8 out of 10, Excellent, (1004)
"Large, comfy room, good service, good location"
United States
Thanapong
The price is NT$4,528
NT$6,416 total
includes taxes & fees
Jan 4 - 2026/1/5
Hotel Indigo San Diego-Gaslamp Quarter by IHG
Front of property
The Pearl Hotel

The Pearl Hotel

The Pearl Hotel
4.0 star property
Point Loma
8.8 out of 10, Excellent, (1004)
"Lovely spot would stay again "
United States
danixa
The price is NT$3,607
NT$4,074 total
includes taxes & fees
Jan 5 - 2026/1/6
The Pearl Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top San Ysidro Hotel Reviews

The Dana on Mission Bay

The Dana on Mission Bay

10/10 Excellent
"The staff members are very helpful. When I talked to them the pillows are a little bit firm to me because I like the very soft pillows they quickly brought me two down filled softer pillows to me. The room is very clean and the garden view is so beautiful. We all felt comfortable and relaxed when we were leaving at The Dana. Thanks for your best service! We will be back when we visit San Diego next time."
Jiaoheng 4-night trip
Posted 2 days ago
The Dana on Mission Bay

Frequently asked questions

What's there to see and do in San Ysidro?
The beaches, shopping, and restaurants are just some of the things to enjoy while you're in the area. Top activities and sights around San Ysidro include San Diego Zoo, San Ysidro Border Crossing, and Petco Park. You might also want to see places like Port of San Diego, Mission Bay, and Centro Cultural Tijuana during your trip.
What kind of weather should I plan for when I travel to San Ysidro?
Having a good idea of the weather in San Ysidro is important when you plan your trip. The hottest months are usually August and September with an average temp of 71°F, while the coldest months are February and January with an average of 57°F. Average annual precipitation for San Ysidro is 13 inches.
What's the best way to get to my boutique hotel in San Ysidro?
You have a few options for transportation to and around San Ysidro. The nearest major airport is Tijuana Intl. Airport (TIJ), which is located 4 mi (6.5 km) from the heart of the city, but San Diego Intl. Airport (SAN) may also be an option. Metro stations nearby include Beyer Blvd Trolley Station and San Ysidro Transit Center Station.

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