The Best Hotels Closest to Boot Key Harbor in Marathon for 2026

Our top choices for Boot Key Harbor hotels

Captain Pips Marina & Hideaway

1.2 km from Boot Key Harbor

Caroline

NT$4,989 total

includes taxes & fees

Jun 9 - Jun 10

On the beach, beach cabanas, sun loungers

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.8 km from Boot Key Harbor

Ana M

NT$7,708 total

includes taxes & fees

Jun 28 - Jun 29

On the beach, sun loungers, beach umbrellas, beach towels

Isla Bella Beach Resort & Spa

2.4 km from Boot Key Harbor

Anna

NT$11,471 total

includes taxes & fees

Jun 30 - Jul 1

Premium bedding, soundproofing, iron/ironing board, free WiFi

Knight's Key Suites

2.7 km from Boot Key Harbor

Raghavan

NT$3,927 total

includes taxes & fees

Jun 18 - Jun 19

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

1 km from Boot Key Harbor

Kenier

NT$6,936 total

includes taxes & fees

Jun 10 - Jun 11

Skipjack Resort & Marina

1.7 km from Boot Key Harbor

Ysabel

NT$7,605 total

includes taxes & fees

Jun 7 - Jun 8

Tropical Cottages

2.9 km from Boot Key Harbor

Andrea

NT$3,889 total

includes taxes & fees

Jun 7 - Jun 8

Banana Bay Resort & Marina

1.6 km from Boot Key Harbor

Felix

NT$5,763 total

includes taxes & fees

Jul 2 - Jul 3

Tranquility Bay Beachfront Hotel and Resort

0.7 km from Boot Key Harbor

maybelis

NT$11,555 total

includes taxes & fees

Jun 14 - Jun 15

Aqua Lodge Rentals At Coconut Cay

3.9 km from Boot Key Harbor

Stephanie

NT$11,992 total

includes taxes & fees

Jun 9 - Jun 10

Private beach, sun loungers, beach towels, kayaking

Seascape Resort & Marina

4.1 km from Boot Key Harbor

Jeffrey

NT$7,893 total

includes taxes & fees

Jun 16 - Jun 17

Premium Room, 1 King Bed, Lanai, Lagoon View (Kitchenette) | View from room

Kingsail Resort

3.6 km from Boot Key Harbor

Yaiquimi

NT$3,517 total

includes taxes & fees

Jun 22 - Jun 23

Fairfield Inn & Suites by Marriott Marathon Florida Keys

8.3 km from Boot Key Harbor

peggy

NT$6,329 total

includes taxes & fees

Jun 8 - Jun 9

Coconut Cay Resort & Marina

3.7 km from Boot Key Harbor

Donald

NT$4,420 total

includes taxes & fees

Jun 8 - Jun 9

2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, sun loungers

Glunz Ocean Beach Hotel & Resort

8.3 km from Boot Key Harbor

Angus

NT$7,680 total

includes taxes & fees

Jun 7 - Jun 8

Hampton Inn Marathon - Florida Keys

8.5 km from Boot Key Harbor

Norma

NT$5,769 total

includes taxes & fees

Jun 15 - Jun 16

Grassy Flats Resort & Beach Club

15.6 km from Boot Key Harbor

Shonlyn

NT$10,482 total

includes taxes & fees

Jun 8 - Jun 9

Siesta Motel

3.9 km from Boot Key Harbor

Karen

NT$3,580 total

includes taxes & fees

Jun 7 - Jun 8

Rainbow Bend Resort

15 km from Boot Key Harbor

Linda

NT$5,075 total

includes taxes & fees

Jun 8 - Jun 9

Gulf View Waterfront Resort

16.4 km from Boot Key Harbor

Kathleen

NT$5,699 total

includes taxes & fees

Jun 7 - Jun 8

View all properties

Compare popular hotels close to Boot Key Harbor

Property	Property class	Guest rating
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,006 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,003 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,169 reviews	View
Knight's Key Suites	3.0 star property	9.0 Wonderful 1,199 reviews	View
Faro Blanco Resort Marathon Florida Keys, Curio by Hilton	4.0 star property	8.6 Excellent 1,161 reviews	View

Top Boot Key Harbor Hotel Reviews

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

10/10 Excellent

"Second time we have stayed there. The in room fridge is a little tight, for what we like to use it for. Great location for the first half our trip. Great to have the beach chairs and cooler and umbrella!! Will definitely use that amenity again in the future."

Banana Bay Resort & Marina

6/10 Okay

"The room was good with comfy beds. We couldn’t get the room to cool down though so it was a bit warmer than we would have liked. The shower sprays everywhere outside the shower stall so we needed towel to mop it up. I ended up with glass in my foot at the pool but the pool was enjoyable other than that. The breakfast was lacking. It was frozen breakfast sandwiches or a prepackaged muffin. I don’t think I would call that a continental breakfast. Probably wouldn’t stay here again."

Yacht Haven Marina

8/10 Good

"We enjoyed our stay here. It was quiet with exception of early morning rooster calls (not fault of property mgt). We used the pool facility and enjoyed the sun and swim at a clean pool. The staff at Yacht Haven accommodated all of our requests for clean towels during our stay. The AC was quiet and provided cool lodging."

Isla Bella Beach Resort & Spa

4/10 Poor

"We recently stayed here for a week and there were a few things prospective guests should know. First, the resort places a $1,200 hold on your card for the duration of your stay. We were surprised by this because it was not clearly disclosed during the booking process. Second, if you’re booking this property primarily for the beach, you may want to adjust your expectations. We found the beach area to be muddy with an unpleasant odor, which was disappointing and significantly different from what we anticipated. The beds were also uncomfortable. We could feel the mattress springs, and getting a restful night’s sleep was difficult. While the property itself has some nice features, these issues had a significant impact on our overall experience. Unfortunately, we left feeling disappointed given the cost of the stay and our expectations."

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

6/10 Okay

"The hot tub was not on the property but was accessible through the property next-door, which was a little bit of a walk. Would have given it five stars if it wasn’t for the terrible individual at check-in. I don’t remember his name, but he stayed in the room in the back, not in the front where he belonged. He checked me into a room with no view actually a view with the wood fence could not see anything it felt like a prison cell. Call down to change room and was given a room on the third floor with a much better view of the pool problem solved, but it was and seemed like he didn’t care at all about my concerns or needs. I then ask for two robes to be sent to my room and you sent me two rolls of toilet paper instead so obviously there’s something seriously wrong with somebody who doesn’t care to listen to what you’re saying or your needs. Other than that overall I would go back knowing that I would have to deal with this moron again."

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

4.6/5 (946 reviews)

Explore the campus of The Turtle Hospital during your stay in Marathon. Stroll along the area's marina, or simply savor its seafood restaurants.

See properties

Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travelers love the area for its beautiful beaches, top seafood restaurants, and dolphin viewing opportunities. If you're looking for a convenient place to stay, check out the 212 hotels and other accommodations you'll find within a mile.

What's the best hotel to stay near Boot Key Harbor?

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveler data, and this hotel offers 2 outdoor pools and 2 bars. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good choices within a short distance include Tranquility Bay Beachfront Hotel and Resort and Faro Blanco Resort Marathon Florida Keys, Curio by Hilton.

How many hotels are there close to Boot Key Harbor?

Expedia has 212 hotels and other accommodations within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes, you'll find most hotel reservations are fully refundable if you cancel before the hotel's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the "fully refundable" filter to view the top deals on offer near Boot Key Harbor.

Where can I learn more about changing or cancelling my trip in the area near Boot Key Harbor?

To find more details about rescheduling or cancelling your stay near Boot Key Harbor, go to https://www.expedia.com/service/.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Find hotels near Boot Key Harbor, Marathon from NT$3,517

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Our top choices for Boot Key Harbor hotels

Captain Pips Marina & Hideaway

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Isla Bella Beach Resort & Spa

Knight's Key Suites

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Skipjack Resort & Marina

Tropical Cottages

Banana Bay Resort & Marina

Tranquility Bay Beachfront Hotel and Resort

Aqua Lodge Rentals At Coconut Cay

Seascape Resort & Marina

Kingsail Resort

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Coconut Cay Resort & Marina

Glunz Ocean Beach Hotel & Resort

Hampton Inn Marathon - Florida Keys

Grassy Flats Resort & Beach Club

Siesta Motel

Rainbow Bend Resort

Gulf View Waterfront Resort

Compare popular hotels close to Boot Key Harbor

Top Boot Key Harbor Hotel Reviews

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

Frequently asked questions