A lighthouse on a rocky coastline with the ocean in the foreground.

Find Cheap Hotels in San Juan Islands, WA

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Islands Cheap Hotels

Tonight
Sep 19 - Sep 20
Tomorrow
Sep 20 - Sep 21
Next weekend
Sep 25 - Sep 27
In two weeks
Oct 2 - Oct 4

Our top choices for San Juan Islands cheap hotels

1. The Orca Inn

The Orca Inn
Friday Harbor
United States
Andrew
NT$3,093
NT$3,422 total
includes taxes & fees
Oct 1 - Oct 2
The Orca Inn

2. Discovery Inn

Discovery Inn
Friday Harbor
United States
Victoria
NT$5,413
NT$5,990 total
includes taxes & fees
Oct 4 - Oct 5
Discovery Inn

3. Friday Harbor Suites

Friday Harbor Suites
Friday Harbor
United States
Jennifer
NT$6,047
NT$6,691 total
includes taxes & fees
Oct 4 - Oct 5
Friday Harbor Suites

4. Rosario Resort

Rosario Resort
Eastsound
United States
David
NT$4,446
NT$5,702 total
includes taxes & fees
Oct 8 - Oct 9
Rosario Resort

5. Lopez Islander Resort

Lopez Islander Resort
Lopez Island
United States
Diane
NT$5,697
NT$6,286 total
includes taxes & fees
Oct 1 - Oct 2
Lopez Islander Resort

6. Bird Rock Hotel

Bird Rock Hotel
Friday Harbor
United States
Vanessa
NT$5,092
NT$5,634 total
includes taxes & fees
Oct 1 - Oct 2
Bird Rock Hotel

7. Tucker House Inn

Tucker House Inn
Friday Harbor
United States
ZACHARY
NT$4,586
NT$5,074 total
includes taxes & fees
Oct 20 - Oct 21
Tucker House Inn

8. Earthbox Inn & Spa

Earthbox Inn & Spa
Friday Harbor
United States
Nicole
NT$7,320
NT$8,099 total
includes taxes & fees
Oct 1 - Oct 2
Earthbox Inn & Spa

9. Deer Harbor Inn

Deer Harbor Inn
Deer Harbor
United States
Nemo
NT$6,454
NT$7,122 total
includes taxes & fees
Oct 16 - Oct 17
Deer Harbor Inn

10. Snug Harbor Resort

Snug Harbor Resort
Friday Harbor
United States
Patricia
NT$7,924
NT$8,745 total
includes taxes & fees
Oct 18 - Oct 19
Snug Harbor Resort
View all properties

Find out more about San Juan Islands

Discover cheap things to do in San Juan Islands

The San Juan Islands offer a paradise of affordable activities perfect for travelers seeking value without sacrificing quality. Start your adventure at the San Juan Island National Historical Park, where you can explore scenic trails and stunning coastal views free of charge. Don’t miss the chance to spot orcas on a budget-friendly whale-watching tour – local operators often offer deals for families, allowing you to experience these majestic creatures without breaking the bank. For a taste of local culture, visit the charming town of Friday Harbor, where you can stroll through galleries and shops, many of which feature local artisans. Enjoy a picnic at Lime Kiln Point State Park, famous for its historic lighthouse and breathtaking sunsets, where admission is free. Finally, consider a guided kayak tour around the islands, often available at competitive rates, providing an unforgettable way to experience the natural beauty up close. When it comes to staying, consider budget-friendly hotels in Friday Harbor, which not only offer comfy accommodations but also places you right in the heart of these experiences, ensuring convenience and easy access to all the local attractions.

Top San Juan Islands Hotel Reviews

Explore a world of travel with Expedia