A lighthouse on a rocky coastline with the ocean in the foreground.

Find Cheap Hotels in San Juan Islands, WA

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check availability on San Juan Islands Cheap Hotels

This weekend
Next weekend

Our top choices for San Juan Islands cheap hotels

1. Discovery Inn

Discovery Inn
2.0 star property
Friday Harbor
10.0 out of 10, Exceptional, (70 reviews)
"We enjoyed our stay here. The property is very nice. The host were excellent."
United States
Robert
The price is NT$5,542
NT$6,133 total
includes taxes & fees
Nov 7 - Nov 8
Discovery Inn

2. Snug Harbor Resort

Snug Harbor Resort
2.5 star property
Friday Harbor
9.8 out of 10, Exceptional, (550 reviews)
"Great place to stay. Comfortable cabins with well-appointed kitchens. Views were incredible! Fully enjoyed the firewood and fire pits both evenings - great way to chat with other guests. Didn’t realize until we were checking out how well-stocked the gift shop was with grocery essentials - knowing this sooner would have saved us several trips to town so be sure to check it out!"
United States
Amy
The price is NT$7,462
NT$8,234 total
includes taxes & fees
Nov 8 - Nov 9
Snug Harbor Resort

3. The Edenwild Boutique Inn

The Edenwild Boutique Inn
2.5 star property
Lopez Island
9.4 out of 10, Exceptional, (279 reviews)
"The staff was fantastic and the breakfast was one of the best we have had at a hotel."
United States
Frances
The price is NT$4,422
NT$4,879 total
includes taxes & fees
Nov 5 - Nov 6
The Edenwild Boutique Inn

4. Otters Pond Bed & Breakfast

Otters Pond Bed & Breakfast
4.0 star property
Eastsound
10.0 out of 10, Exceptional, (73 reviews)
"Amazing!"
United States
Kristin
The price is NT$7,038
NT$7,766 total
includes taxes & fees
Nov 12 - Nov 13
Otters Pond Bed & Breakfast

5. Friday Harbor House

Friday Harbor House
3.5 star property
Friday Harbor
9.6 out of 10, Exceptional, (286 reviews)
"Staff and restaurant were exceptionally good"
United States
Randy
The price is NT$9,941
NT$11,000 total
includes taxes & fees
Nov 10 - Nov 11
Friday Harbor House

6. Tucker House Inn

Tucker House Inn
4.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (310 reviews)
"Will be staying again. Loved it"
United States
Caymin
The price is NT$4,695
NT$5,195 total
includes taxes & fees
Nov 4 - Nov 5
Tucker House Inn

7. Roche Harbor Resort

Roche Harbor Resort
3.0 star property
Friday Harbor
9.2 out of 10, Wonderful, (462 reviews)
"Hotel was lovely, highly recommend."
United States
Nicco
The price is NT$6,334
NT$7,339 total
includes taxes & fees
Nov 4 - Nov 5
Roche Harbor Resort

8. The Orca Inn

The Orca Inn
2.0 star property
Friday Harbor
8.2 out of 10, Very good, (178 reviews)
"Nice place .. walking distance from the ferry ..staff was super nice will stay again"
United States
Andrew
The price is NT$3,167
NT$3,504 total
includes taxes & fees
Nov 10 - Nov 11
The Orca Inn

9. Friday Harbor Suites

Friday Harbor Suites
2.5 star property
Friday Harbor
8.6 out of 10, Excellent, (1,004 reviews)
"First time visiting the island and my family and I enjoyed this hotel, exceeded our expectations"
United States
Ana
The price is NT$4,987
NT$5,519 total
includes taxes & fees
Dec 4 - Dec 5
Friday Harbor Suites

10. West Beach Resort

West Beach Resort
3.5 star property
Eastsound
9.4 out of 10, Exceptional, (121 reviews)
"Great spot!"
United States
Garrett
The price is NT$5,254
NT$5,797 total
includes taxes & fees
Nov 8 - Nov 9
West Beach Resort

11. Landmark Inn on Orcas Island

Landmark Inn on Orcas Island
3.0 star property
Eastsound
9.4 out of 10, Exceptional, (217 reviews)
"Easy check in, wonderfully helpful staff and perfect location."
United States
Tyler
The price is NT$7,232
NT$7,981 total
includes taxes & fees
Nov 17 - Nov 18
Landmark Inn on Orcas Island

12. Outlook Inn

Outlook Inn
3.0 star property
Eastsound
9.2 out of 10, Wonderful, (535 reviews)
"Amazing stay 10/10"
United States
Saubali
The price is NT$9,397
NT$10,858 total
includes taxes & fees
Dec 3 - Dec 4
Outlook Inn

13. Bird Rock Hotel

Bird Rock Hotel
2.0 star property
Friday Harbor
8.8 out of 10, Excellent, (399 reviews)
"We loved our stay! The room was clean and comfortable and the location was perfect. There were plenty of shops and places to eat nearby, and the air conditioning worked great. It was a beautiful and convenient place to stay for our trip. We would definitely stay here again!"
United States
Vanessa
The price is NT$5,050
NT$5,589 total
includes taxes & fees
Nov 8 - Nov 9
Bird Rock Hotel

14. Lopez Islander Resort

Lopez Islander Resort
3.5 star property
Lopez Island
8.6 out of 10, Excellent, (438 reviews)
"Good location with a variety of accommodations."
United States
Jane
The price is NT$5,832
NT$6,436 total
includes taxes & fees
Nov 10 - Nov 11
Lopez Islander Resort

15. Rosario Resort

Rosario Resort
2.0 star property
Eastsound
7.8 out of 10, Good, (203 reviews)
"Very nice hotel. Quiet, clean, nice location and beautiful view. and the price very valuable. If I come to Orcas Island, I would stay again."
United States
Alina
The price is NT$4,355
NT$5,620 total
includes taxes & fees
Nov 6 - Nov 7
Rosario Resort

16. Earthbox Inn & Spa

Earthbox Inn & Spa
3.0 star property
Friday Harbor
8.8 out of 10, Excellent, (1,000 reviews)
"Great place to stay. Love the spa and amenities."
United States
Troy
The price is NT$7,168
NT$7,932 total
includes taxes & fees
Nov 8 - Nov 9
Earthbox Inn & Spa

17. Deer Harbor Inn

Deer Harbor Inn
3.0 star property
Deer Harbor
8.4 out of 10, Very good, (227 reviews)
"It was comfy!"
United States
Nemo
The price is NT$7,781
NT$8,586 total
includes taxes & fees
Nov 5 - Nov 6
Deer Harbor Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Find out more about San Juan Islands

Discover cheap things to do in San Juan Islands

The San Juan Islands offer a paradise of affordable activities perfect for travelers seeking value without sacrificing quality. Start your adventure at the San Juan Island National Historical Park, where you can explore scenic trails and stunning coastal views free of charge. Don’t miss the chance to spot orcas on a budget-friendly whale-watching tour – local operators often offer deals for families, allowing you to experience these majestic creatures without breaking the bank. For a taste of local culture, visit the charming town of Friday Harbor, where you can stroll through galleries and shops, many of which feature local artisans. Enjoy a picnic at Lime Kiln Point State Park, famous for its historic lighthouse and breathtaking sunsets, where admission is free. Finally, consider a guided kayak tour around the islands, often available at competitive rates, providing an unforgettable way to experience the natural beauty up close. When it comes to staying, consider budget-friendly hotels in Friday Harbor, which not only offer comfy accommodations but also places you right in the heart of these experiences, ensuring convenience and easy access to all the local attractions.

Top San Juan Islands Hotel Reviews

Explore a world of travel with Expedia