Find Boutique Hotels in San Juan Island, WA

Start date: Check-in selected.
To Date
End date: Check-out
    calendar shield illustration

    Change your mind

    Book hotels with free cancellation
    deals illustration

    Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
    bed illustration

    Be picky

    Search almost a million properties worldwide

Check availability on San Juan Island Boutique Hotels

Tonight
Sep 25 - Sep 26
Tomorrow
Sep 26 - Sep 27
This weekend
Sep 26 - Sep 28
Next weekend
Oct 3 - Oct 5

Top San Juan Island Boutique Hotels

We don't have any properties that match your exact search
See all properties in San Juan Island

Recommended hotels in San Juan Island

The Marina Inn
Standard Room, 2 Queen Beds | Hypo-allergenic bedding, iron/ironing board, free cribs/infant beds

The Marina Inn

2.5 star property
9.4 out of 10, Exceptional, (1019)
"Nice clean place, comfortable bed, nice breakfast and great service."
The price is NT$3,787
NT$4,257 total
includes taxes & fees
Sep 28 - Sep 29
The Marina Inn
Trumpeter Inn
Exterior

Trumpeter Inn

3.0 star property
9.8 out of 10, Exceptional, (240)
"Amazing stay. Would highly recommend."
The price is NT$4,838
NT$5,339 total
includes taxes & fees
Oct 1 - Oct 2
Trumpeter Inn
Anacortes Ship Harbor Inn
Exterior

Anacortes Ship Harbor Inn

3.0 star property
9.0 out of 10, Wonderful, (1019)
"Beautiful views and a great place to stay!"
The price is NT$2,836
NT$3,142 total
includes taxes & fees
Oct 7 - Oct 8
Anacortes Ship Harbor Inn
Roche Harbor Resort
King Suite w/View - Quarryman Hall

Roche Harbor Resort

3.0 star property
9.2 out of 10, Wonderful, (398)
"Interesting historic and Beautiful place"
Roche Harbor Resort
Coachman Inn & Suites
Exterior

Coachman Inn & Suites

2.5 star property
9.0 out of 10, Wonderful, (1018)
"Very nice property, well updated, friendly staff, great breakfast."
The price is NT$3,938
NT$4,372 total
includes taxes & fees
Oct 2 - Oct 3
Coachman Inn & Suites
Friday Harbor Suites
Front of property

Friday Harbor Suites

2.5 star property
8.4 out of 10, Very Good, (1000)
"Great place to stay. "
The price is NT$6,197
NT$6,857 total
includes taxes & fees
Sep 28 - Sep 29
Friday Harbor Suites
Snug Harbor Resort
Front of property

Snug Harbor Resort

2.5 star property
9.8 out of 10, Exceptional, (409)
"Loved our stay here!"
The price is NT$6,799
NT$7,503 total
includes taxes & fees
Oct 19 - Oct 20
Snug Harbor Resort
Tucker House Inn
Front of property

Tucker House Inn

4.0 star property
9.4 out of 10, Exceptional, (271)
"Beautiful and quiet destination."
The price is NT$5,188
NT$5,741 total
includes taxes & fees
Oct 13 - Oct 14
Tucker House Inn
The Orca Inn
Exterior

The Orca Inn

2.0 star property
7.8 out of 10, Good, (1017)
"Great stay"
The price is NT$3,135
NT$3,469 total
includes taxes & fees
Oct 3 - Oct 4
The Orca Inn
Bird Rock Hotel
Property grounds

Bird Rock Hotel

2.0 star property
8.8 out of 10, Excellent, (356)
"Room is a little small but very clean. "
The price is NT$5,877
NT$6,503 total
includes taxes & fees
Oct 7 - Oct 8
Bird Rock Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top San Juan Island Hotel Reviews

Bird Rock Hotel

Bird Rock Hotel

10/10 Excellent
"The electronic check-in went smoothly and the location was great. Room was comfortable and the area was quiet. "
Bret 1-night trip
Posted 6 days ago
Bird Rock Hotel

Explore a world of travel with Expedia

Explore a world of travel with Expedia