An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,562 reviews)
"Great location, very clean and lots to do around the area!"
United States
Terri
The price is NT$6,740
NT$9,453 total
includes taxes & fees
Sep 7 - Sep 8
San Diego Mission Bay Resort

2. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,441 reviews)
"Great stay"
United States
Loretta
The price is NT$6,095
NT$7,933 total
includes taxes & fees
Sep 7 - Sep 8
The Dana on Mission Bay

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,811 reviews)
"great location and great dining options"
United States
Beatrice A
The price is NT$7,198
NT$9,980 total
includes taxes & fees
Sep 7 - Sep 8
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,639 reviews)
"We absolutely loved this hotel and will definitely revisit!"
United States
Casey
The price is NT$6,224
NT$8,860 total
includes taxes & fees
Sep 2 - Sep 3
Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,713 reviews)
"Very nice hotel, close to the SD Airport."
Mexico
Brenda
The price is NT$5,394
NT$6,201 total
includes taxes & fees
Aug 31 - Sep 1
Hampton Inn & Suites San Diego Airport Liberty Station

6. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,491 reviews)
"Loved the stay the staff were amazing!"
United States
Cari
The price is NT$3,865
NT$4,443 total
includes taxes & fees
Aug 23 - Aug 24
Hilton Garden Inn San Diego Old Town/SeaWorld Area

7. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,176 reviews)
"It was a good stay for the price!"
United States
marissa
The price is NT$4,034
NT$4,637 total
includes taxes & fees
Aug 30 - Aug 31
Wyndham Garden San Diego Near SeaWorld

8. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,089 reviews)
"Very good hotel at the price with good choice of breakfast."
United States
Tirthankar
The price is NT$4,386
NT$5,041 total
includes taxes & fees
Sep 1 - Sep 2
Holiday Inn Express San Diego Airport - Old Town by IHG

9. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very Good, (2,103 reviews)
"Pool and view, close to old town."
United States
Fernando
The price is NT$4,615
NT$5,305 total
includes taxes & fees
Aug 23 - Aug 24
Best Western Plus Hacienda Hotel Old Town

10. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,186 reviews)
"Clean rooms, friendly staff and great having the breakfast"
United States
alicia
The price is NT$4,998
NT$5,745 total
includes taxes & fees
Sep 3 - Sep 4
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

11. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very Good, (2,889 reviews)
"Very good budget friendly place to stay."
United States
Merlyn A.
The price is NT$4,871
NT$5,599 total
includes taxes & fees
Aug 16 - Aug 17
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

12. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,681 reviews)
"Great stay"
United States
Juan
The price is NT$5,183
NT$5,958 total
includes taxes & fees
Aug 30 - Aug 31
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

13. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very Good, (3,646 reviews)
"Perfect hotel for family fun."
United States
Andre
The price is NT$4,031
NT$6,265 total
includes taxes & fees
Aug 23 - Aug 24
Sheraton San Diego Resort

14. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,305 reviews)
"Perfect for a family vacation, close to Sea World and places to visit around it."
United States
Alma
The price is NT$3,268
NT$3,756 total
includes taxes & fees
Aug 16 - Aug 17
GreenTree Inn San Diego Mission Bay

15. Courtyard by Marriott San Diego Mission Valley/Hotel Circle

Courtyard by Marriott San Diego Mission Valley/Hotel Circle
3.5 star property
5.4 km from Mission Bay
8.4 out of 10, Very Good, (1,532 reviews)
"Everything was great"
United States
Armando
The price is NT$4,360
NT$5,012 total
includes taxes & fees
Aug 23 - Aug 24
Courtyard by Marriott San Diego Mission Valley/Hotel Circle

16. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (3,982 reviews)
"Room was clean, staff was friendly"
United States
Ronald
The price is NT$3,700
NT$4,253 total
includes taxes & fees
Sep 7 - Sep 8
Comfort Inn Sea World Area

17. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
5.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,643 reviews)
"Great central location for all the tourist activities around San Diego"
United States
Ann
The price is NT$6,201
NT$7,127 total
includes taxes & fees
Sep 7 - Sep 8
Homewood Suites by Hilton San Diego Airport/Liberty Station

18. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,015 reviews)
"Clean room, great staff and good breakfast"
United States
Leslie
The price is NT$4,869
NT$5,597 total
includes taxes & fees
Sep 7 - Sep 8
Holiday Inn Express San Diego - SeaWorld Area by IHG

19. Embassy Suites by Hilton San Diego La Jolla

Embassy Suites by Hilton San Diego La Jolla
4.0 star property
University City, 11 km from Mission Bay
8.8 out of 10, Excellent, (2,008 reviews)
"Clean room, good breakfast and friendly staff"
United States
Tamisha
The price is NT$6,056
NT$7,879 total
includes taxes & fees
Aug 16 - Aug 17
Embassy Suites by Hilton San Diego La Jolla

20. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,924 reviews)
"Well kept, great location and would definitely recommend and stay again!"
United States
Jennifer
The price is NT$4,639
NT$5,323 total
includes taxes & fees
Aug 26 - Aug 27
Old Town Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Dip your toes in the water at Ski Beach or Mission and Pacific Beaches while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, Crown Point Shores and North Cove Beach are also worth a stop.