An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,584 reviews)
"Wonderful place"
United States
Angela
The price is NT$7,246
NT$10,002 total
includes taxes & fees
Sep 8 - Sep 9
San Diego Mission Bay Resort

2. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,455 reviews)
"Loved our stay here!"
United States
elizabeth
The price is NT$5,083
NT$6,752 total
includes taxes & fees
Sep 28 - Sep 29
The Dana on Mission Bay

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,869 reviews)
"Resort was beautiful rooms nice its very clean would stay again!!!"
United States
Sandra
The price is NT$6,580
NT$9,237 total
includes taxes & fees
Oct 4 - Oct 5
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,659 reviews)
"Beautiful pool area for the kids to enjoy."
United States
Jerri
The price is NT$5,347
NT$7,820 total
includes taxes & fees
Sep 7 - Sep 8
Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,293 reviews)
"Great place to stay. Great price always happy with our stay."
United States
Joshua
The price is NT$4,432
NT$5,094 total
includes taxes & fees
Sep 8 - Sep 9
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

6. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,510 reviews)
"great location, excellent hotel"
United States
Edward Palacios
The price is NT$3,908
NT$4,492 total
includes taxes & fees
Sep 27 - Sep 28
Hilton Garden Inn San Diego Old Town/SeaWorld Area

7. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,711 reviews)
"Loved the staff and location."
United States
David
The price is NT$5,761
NT$6,622 total
includes taxes & fees
Oct 5 - Oct 6
Hampton Inn & Suites San Diego Airport Liberty Station

8. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
9.0 out of 10, Wonderful, (1,003 reviews)
"all good nice stay nice breakfast will revisit soon"
Canada
nishant
The price is NT$4,271
NT$4,910 total
includes taxes & fees
Sep 8 - Sep 9
Holiday Inn Express San Diego - SeaWorld Area by IHG

9. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,191 reviews)
"Great place to stay!"
United States
Nayla
The price is NT$2,874
NT$3,304 total
includes taxes & fees
Sep 13 - Sep 14
Wyndham Garden San Diego Near SeaWorld

10. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
5.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,685 reviews)
"Amazing place location and hotel staff were amazing."
United States
Orlyn
The price is NT$6,335
NT$7,282 total
includes taxes & fees
Sep 7 - Sep 8
Homewood Suites by Hilton San Diego Airport/Liberty Station

11. Town and Country San Diego

Town and Country San Diego
4.0 star property
5.2 km from Mission Bay
8.6 out of 10, Excellent, (1,835 reviews)
"Enjoyed our stay"
United States
Sol
The price is NT$6,263
NT$8,295 total
includes taxes & fees
Sep 6 - Sep 7
Town and Country San Diego

12. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.6 out of 10, Excellent, (3,676 reviews)
"Lovely resort with great food and great location . Good for a relaxing getaway ."
United States
Pooja
The price is NT$5,370
NT$7,779 total
includes taxes & fees
Sep 7 - Sep 8
Sheraton San Diego Resort

13. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,171 reviews)
"Great being near Old Town nice food nearby and fun visitor destinations."
United States
Anthony
The price is NT$4,007
NT$4,606 total
includes taxes & fees
Sep 7 - Sep 8
Fairfield Inn & Suites San Diego Old Town

14. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,344 reviews)
"I liked that the stay was near where I was visiting ."
United States
Alexis
The price is NT$3,562
NT$4,095 total
includes taxes & fees
Sep 21 - Sep 22
GreenTree Inn San Diego Mission Bay

15. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (4,082 reviews)
"Great location and friendly."
United States
Rick
The price is NT$3,607
NT$4,146 total
includes taxes & fees
Sep 8 - Sep 9
Comfort Inn Sea World Area

16. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,712 reviews)
"It was a great stay!"
United States
Demetrius
The price is NT$5,163
NT$5,935 total
includes taxes & fees
Oct 4 - Oct 5
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very Good, (2,975 reviews)
"Great place to stay"
United States
Philomena
The price is NT$4,178
NT$4,802 total
includes taxes & fees
Oct 1 - Oct 2
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

18. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,094 reviews)
"Very good hotel at the price with good choice of breakfast."
United States
Tirthankar
The price is NT$4,480
NT$5,150 total
includes taxes & fees
Sep 23 - Sep 24
Holiday Inn Express San Diego Airport - Old Town by IHG

19. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,963 reviews)
"Great place to stay!!!"
United States
Layne
The price is NT$4,722
NT$5,418 total
includes taxes & fees
Sep 7 - Sep 8
Old Town Inn

20. Courtyard by Marriott Old Town

Courtyard by Marriott Old Town
3.0 star property
Old Town San Diego, 3.9 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"Hospitality was wonderful and location was perfect"
United States
Christine
The price is NT$4,814
NT$5,533 total
includes taxes & fees
Sep 7 - Sep 8
Courtyard by Marriott Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and The Dana On Mission Bay, BW Premier Collection are also worth a stop.