Clayton, NY, USA - 02-09-2025: Winter aerial image Clayton, NY along a frozen St Lawrence River

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Our top choices for Clayton hotels

A multi-story hotel with a well-maintained lawn and outdoor seating area.
An outdoor seating area with a fire pit, chairs, and tables.
A lobby with a stone wall, a round table with a vase of flowers, and a chandelier.
A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

1. 1000 Islands Harbor Hotel

1000 Islands Harbor Hotel
Clayton
United States
Nathan
NT$6,709
NT$7,447 total
includes taxes & fees
Sep 1 - Sep 2
1000 Islands Harbor Hotel
A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.
A stone building with a steep staircase leading to a door.
A lakeside view with a dock, benches, and a row of houses.
A room with a view of a lake, wicker chairs, a small table, and a basket.

2. Chateau Country Inn

Chateau Country Inn
Clayton
United States
Danny
NT$3,984
NT$4,422 total
includes taxes & fees
Sep 6 - Sep 7
Chateau Country Inn
A wooden deck with a railing overlooking a body of water and a distant shoreline.
A marina with boats docked at wooden piers, calm water, and a distant shoreline.
A two-story house with a balcony on the upper floor, a front door, and a staircase leading to the entrance.
A wooden cabin with large windows overlooking a body of water. There are two chairs and a table, and a lamp is visible.

3. West Winds Motel & Cottages

West Winds Motel & Cottages
Clayton
United States
michael
NT$3,301
NT$3,664 total
includes taxes & fees
Sep 7 - Sep 8
West Winds Motel & Cottages
A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.
A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.
An indoor swimming pool with chairs and a lifeguard stand.
A Holiday Inn Express & Suites hotel with a covered entrance, multiple floors, and landscaped gardens.

4. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
Watertown
United States
Bridget
NT$4,016
NT$4,457 total
includes taxes & fees
Sep 27 - Sep 28
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.
An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.
A reception desk with a "Welcome to Watertown" sign, framed pictures, and a "Hilton Honors" sign.
A gym with treadmills, elliptical machines, and free weights.

5. Hampton Inn Watertown

Hampton Inn Watertown
Watertown
United States
Wanda
NT$3,863
NT$4,288 total
includes taxes & fees
Sep 18 - Sep 19
Hampton Inn Watertown
A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.
A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.
A swimming pool with a changing room, sun loungers, and a hot tub area.
A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

6. Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands
Watertown
United States
Melanie
NT$4,245
NT$4,712 total
includes taxes & fees
Sep 10 - Sep 11
Fairfield Inn & Suites Watertown Thousand Islands
A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.
An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.
A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.
A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

7. Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands
Watertown
United States
Krystle
NT$3,669
NT$4,073 total
includes taxes & fees
Sep 11 - Sep 12
Comfort Inn & Suites Watertown - 1000 Islands
A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.
A pair of white front-loading washers in a laundry room with a tiled floor.
A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.
A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

8. Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum
Calcium
United States
Tanya
NT$2,539
NT$2,818 total
includes taxes & fees
Aug 30 - Aug 31
Days Inn by Wyndham Watertown Fort Drum
A view of a large body of water with a historic building in the background.
A room with a sofa, a lamp, and a view of the water.
A large stone building with a red roof, surrounded by trees and a body of water.
A hotel room with a large bed, a sofa, a dining table with chairs, and a view of a lake through large windows.

9. Capt. Thomson's Resort

Capt. Thomson's Resort
Alexandria Bay Downtown
United States
Luke
NT$5,470
NT$6,072 total
includes taxes & fees
Sep 8 - Sep 9
Capt. Thomson's Resort
A cozy living room with a floral sofa, a matching ottoman, and a vase of flowers.
A bedroom with a four-poster bed, a sitting area with a sofa and armchair, and a fireplace.

10. Thousand Island Hart House

Thousand Island Hart House
Wellesley Island
United States
Jiajun
NT$6,328
NT$7,024 total
includes taxes & fees
Sep 24 - Sep 25
Thousand Island Hart House
A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.
A hotel room with a bed, a television, a desk, and a window.
A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

11. Spark by Hilton Watertown

Spark by Hilton Watertown
Watertown
United States
Kris
NT$3,223
NT$3,578 total
includes taxes & fees
Sep 4 - Sep 5
Spark by Hilton Watertown
A spacious living room with a wooden ceiling, a fireplace, a television, and a dining area with red chairs and a table.
A clear swimming pool with a metal railing, surrounded by lounge chairs and a fenced area.
A hotel room with a wooden floor, a bed with white bedding, a desk with a computer, a chair, and a view of the outdoors through a sliding door.
A wooden deck with a table and striped chairs, surrounded by a white fence and trees.

12. Capt.'s Inn & Suites

Capt.'s Inn & Suites
Alexandria Bay
NT$2,277
NT$2,527 total
includes taxes & fees
Sep 8 - Sep 9
Capt.'s Inn & Suites
A room with a bed, a chair, a table, and a lamp.
A bathroom with a bathtub, a shower, and a toilet.
A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.
A hotel room with a bed, a desk, a chair, and a small table.

13. Allen's Budget Motel

Allen's Budget Motel
Watertown
Canada
Doug
NT$1,897
NT$2,106 total
includes taxes & fees
Sep 10 - Sep 11
Allen's Budget Motel
A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.
A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.
A hotel pool area with multiple hot tubs, a reception desk, and seating areas.
A spacious lobby with high ceilings, large windows, and modern furniture.

14. Hilton Garden Inn Watertown/Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands
Watertown
Canada
Jeremy
NT$4,171
NT$4,630 total
includes taxes & fees
Sep 19 - Sep 20
Hilton Garden Inn Watertown/Thousand Islands
A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.
A marina with multiple boats docked, surrounded by trees and a clear sky.
A building with a flat roof and a parking lot in front.
A kitchen with a coffee maker, a fruit bowl, and a bread display.

15. Harbor House Inn

Harbor House Inn
Sackets Harbor
United States
CLIVE
NT$6,342
NT$7,391 total
includes taxes & fees
Aug 30 - Aug 31
Harbor House Inn
A wooden exterior door with a glass panel, a stone step, and a metal doormat.
A hotel reception area with a white door, a reception desk, and a sign indicating the Royal Inn Office.
A staircase with wooden handrails leading to an upper floor.
A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

16. Royal Inn Motel

Royal Inn Motel
Watertown
United States
Susan
NT$2,213
NT$2,457 total
includes taxes & fees
Aug 31 - Sep 1
Royal Inn Motel
A white building with the letters "RL" on the front.
A compact kitchen with white cabinets, a microwave, a coffee maker, and a refrigerator.
A compact kitchen with a microwave, toaster, and sink. There is a dining table with chairs, a black leather sofa, and a small trash bin.
A small white building with a dark front door, two windows with shutters, and a small porch with white Adirondack chairs.

17. Rock Ledge Motel

Rock Ledge Motel
Alexandria Bay
United States
Ronald
NT$2,390
NT$2,653 total
includes taxes & fees
Sep 20 - Sep 21
Rock Ledge Motel
A modern living room with a flat-screen TV, comfortable seating, and a fireplace.
A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.
A reception area with a marble counter, pendant lighting, and a tiled floor.
A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

18. Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum
Calcium
United States
Nicole
NT$2,590
NT$2,874 total
includes taxes & fees
Sep 22 - Sep 23
Quality Inn & Suites Watertown Fort Drum
A marina with boats docked, a dock extending into the water, and a building with a large water tower in the background.
A hotel room with a large bed, a separate bathroom with a bathtub, and a vanity with a mirror.
A lakeside property with a dock, boats, and outdoor seating.
A motel with a pool, outdoor seating, and a parking lot.

19. Otter Creek Inn

Otter Creek Inn
Alexandria Bay Downtown
United States
Megan
NT$3,320
NT$3,685 total
includes taxes & fees
Sep 8 - Sep 9
Otter Creek Inn
A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.
A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.
A lobby with a reception desk, seating area, and a large potted plant.
A hotel room with a bed, a TV, a desk, and two lamps.

20. Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY
Watertown
Canada
Easter
NT$2,371
NT$2,632 total
includes taxes & fees
Sep 12 - Sep 13
Ramada by Wyndham Watertown/Thousand Islands NY
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Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.
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1000 Islands River Rat Cheese

9.2/10 (78 reviews)
This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.
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Antique Boat Museum

9.0/10 (72 reviews)
North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.
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The Clayton Opera House

8.4/10 (13 reviews)
This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.
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Thousand Islands Museum

7.8/10 (17 reviews)
This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.
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Cedar Point State Park

8.4/10 (18 reviews)
Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.
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Coyote Moon Vineyards

9.0/10 (37 reviews)
This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.
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C-Way Golf Course

7.2/10 (9 reviews)
This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.
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Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton
A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

10/10 Excellent
"TNK"
Jose 1-night trip
Posted 3 hours ago
Ramada by Wyndham Watertown/Thousand Islands NY
Riveredge Resort

Riveredge Resort

10/10 Excellent
"Even though the prooerty is older it was very clean and the staff were always attentive to our needs"
Tim 2-night trip
Posted 5 hours ago
Riveredge Resort
Capt. Thomson's Resort

Capt. Thomson's Resort

10/10 Excellent
"Balcony overlooking the river."
Bernard 1-night trip
Posted 9 hours ago
Capt. Thomson's Resort
Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent
"If in the area we would stay again. The staff was friendly, hotel was clean, breakfast was decent and the pool was warm!"
Tammy 1-night trip
Posted 10 hours ago
Comfort Inn & Suites Watertown - 1000 Islands
Bonnie Castle Resort & Marina

Bonnie Castle Resort & Marina

8/10 Good
"It was a nice and short stay. I read a lot of reviews before deciding to stay at Bonnie Castle. The reviews were accurate. The staff is friendly. The place is very outdated. My room was very clean but the balcony was small and uncomfortable. I went down to the pool. The smell of "chloramine" (chlorine mixed with urine and sweat) was astounding. The smell burned my eyes. We did not use the pool while we were there but it clearly needed to be fully cleaned."
Christina 1-night trip
Posted 11 hours ago
Bonnie Castle Resort & Marina
Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum

8/10 Good
"Everyone was incredibly helpful, but I have to admit there was no variation in breakfast at all, and the rooms are old, my desk chair needed some love."
Greg 5-night trip
Posted 11 hours ago
Quality Inn & Suites Watertown Fort Drum
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

10/10 Excellent
"The staff was friendly, the breakfast was good, the bathroom was clean but a little dated. But overall great experience."
Jerome 1-night trip
Posted 11 hours ago
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG
Capt.'s Inn & Suites

Capt.'s Inn & Suites

10/10 Excellent
"It’s a nice quite and stuff was great"
Terry 3-night trip
Posted 15 hours ago
Capt.'s Inn & Suites
Fairfield Inn & Suites Watertown Thousand Islands

Fairfield Inn & Suites Watertown Thousand Islands

10/10 Excellent
"Overall, this was one of the cleanest hotels I’ve ever stayed in. The room was nice and spacious. The bed was comfortable. The bathroom was clean, and the water pressure in the shower was perfect. It was in a great location with lots of shopping, restaurants, and gas stations nearby, and it was right off of I-81. The staff was friendly, and breakfast was served fresh. I will absolutely stay at this property again."
Teresa 2-night trip
Posted 1 day ago
Fairfield Inn & Suites Watertown Thousand Islands

More cheap stays in Clayton

Capt.'s Inn & Suites

Capt.'s Inn & Suites

116 Church Street Alexandria Bay NY
NT$2,277
NT$2,527 total
Sep 8 - Sep 9
includes taxes & fees
8.8/10 Excellent! (1,005 reviews)
Capt.'s Inn & Suites
Ramada by Wyndham Watertown/Thousand Islands NY

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY
NT$2,371
NT$2,632 total
Sep 12 - Sep 13
includes taxes & fees
8/10 Very Good! (1,092 reviews)
Ramada by Wyndham Watertown/Thousand Islands NY
Days Inn by Wyndham Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY
NT$2,539
NT$2,818 total
Aug 30 - Aug 31
includes taxes & fees
Days Inn by Wyndham Watertown Fort Drum
Quality Inn & Suites Watertown Fort Drum

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY
NT$2,590
NT$2,874 total
Sep 22 - Sep 23
includes taxes & fees
8.2/10 Very Good! (1,003 reviews)
Quality Inn & Suites Watertown Fort Drum
Comfort Inn & Suites Watertown - 1000 Islands

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY
NT$3,669
NT$4,073 total
Sep 11 - Sep 12
includes taxes & fees
8.6/10 Excellent! (1,044 reviews)
Comfort Inn & Suites Watertown - 1000 Islands
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY
NT$4,016
NT$4,457 total
Sep 27 - Sep 28
includes taxes & fees
9.2/10 Wonderful! (1,002 reviews)
Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Hotels in Clayton with star-rating

Frequently asked questions

Where is the best place to stay in Clayton?
1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.
If I need to cancel my hotel reservation in Clayton, will I receive a refund?
Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.
Where can I learn more about changing or cancelling my trip to Clayton?
To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.
What's the best pet-friendly place to stay in Clayton?
West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.
Where is the best hotel to stay near Coyote Moon Vineyards?
1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.
What about the best place to stay close to Clayton Island Tours?
One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.
What's the best hotel for a golf vacation in Clayton?
Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.
What are some accommodations with pools in Clayton?
1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.
What's the best place to stay near Macdonald-Cartier International Airport (YOW)?
Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.
What's it like to stay in Clayton?
Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. In Clayton, there are 120 hotels and other accommodations to choose from. Find out more about Clayton.
What should I do while I'm visiting Clayton?
Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. A couple of additional sights to add to your agenda are 1000 Islands River Rat Cheese and Clayton Marina. Check out what more to see and do in Expedia's Clayton guide.
What's the weather like in Clayton?
The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

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