Top 10 Hotels in Clayton, NY - Competitive Prices

A snowy town with a large building complex, a frozen lake, and a snow-covered landscape.

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Our top choices for Clayton hotels

A multi-story hotel with a well-maintained lawn and outdoor seating area.

A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

An outdoor seating area with a fire pit, chairs, and tables.

A lobby with a stone fireplace, wicker furniture, and a chandelier.

1. 1000 Islands Harbor Hotel

Clayton

maria

NT$4,118

NT$4,571 total

includes taxes & fees

Nov 1 - Nov 2

A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.

A stone building with a steep staircase leading to a door.

A lakeside view with a dock, benches, and a row of houses.

A room with a view of a green landscape, a wicker chair, a small table with a vase, and a hanging decoration.

2. Chateau Country Inn

Clayton

Danny

NT$3,591

NT$3,987 total

includes taxes & fees

Oct 21 - Oct 22

A view of a large body of water with a historic building in the background.

A reception area with a large ship's wheel, a white counter, and a woman standing behind it.

A room with a sofa, a lamp, and a view of the water.

A large stone building with a red roof, surrounded by trees and a body of water.

3. Capt. Thomson's Resort

Alexandria Bay Downtown

Dorothea

NT$2,554

NT$2,835 total

includes taxes & fees

Oct 15 - Oct 16

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

An indoor swimming pool with lounge chairs and a clock on the wall.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

4. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Tammy

NT$3,639

NT$4,040 total

includes taxes & fees

Nov 13 - Nov 14

A waterfront hotel with multiple boats docked in front.

A marina with multiple boats docked, a large building with a distinctive roof, and a backdrop of residential houses and greenery.

A hotel room with a large bed, a bathroom with a bathtub, a desk, and a TV.

A large waterfront hotel with multiple balconies, a marina with boats, and a covered outdoor seating area.

5. Riveredge Resort

Alexandria Bay Downtown

Bruce

NT$3,160

NT$3,508 total

includes taxes & fees

Nov 8 - Nov 9

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

6. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Mark

NT$3,994

NT$4,433 total

includes taxes & fees

Nov 1 - Nov 2

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

A gazebo with a white frame and a dark roof, overlooking a body of water and a distant building.

A waterfront property named Bonnie Castle Manor with a large house, a covered patio, and a dock.

An indoor swimming pool with multiple lanes, white railings, and hanging pendant lights.

7. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

Carol

NT$2,841

NT$3,281 total

includes taxes & fees

Oct 16 - Oct 17

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A gym with treadmills, elliptical machines, and free weights.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

8. Hampton Inn Watertown

Watertown

Susan

NT$3,214

NT$3,568 total

includes taxes & fees

Oct 29 - Oct 30

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

9. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

NT$3,039

NT$3,373 total

includes taxes & fees

Nov 5 - Nov 6

An aerial view of a coastal residential area with houses, docks, and clear turquoise water.

A wooden interior with large windows overlooking a lake, a round table, and chairs.

A cozy cabin with a wooden interior, a sofa, a small table, and large windows overlooking a body of water.

A wooden deck with a table and chairs overlooking a body of water.

10. Angel Rock Waterfront Cottages and Vacation Homes

Cape Vincent

David

NT$5,159

NT$5,726 total

includes taxes & fees

Oct 15 - Oct 16

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

A spacious lobby with high ceilings, large windows, and modern furniture.

11. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Suzanne

NT$4,636

NT$5,146 total

includes taxes & fees

Nov 6 - Nov 7

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A hotel room with a bed, a TV, a desk, and two lamps.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

A lobby with a reception desk, seating area, and a large potted plant.

12. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Jiewu

NT$2,714

NT$3,012 total

includes taxes & fees

Nov 5 - Nov 6

A bedroom with a four-poster bed, a sitting area with a sofa and armchair, and a fireplace.

A staircase with a wooden handrail and a balustrade, leading to a room with a painting of a cat on the wall and a table lamp.

13. Thousand Island Hart House

Wellesley Island

Elaine

NT$6,389

NT$7,092 total

includes taxes & fees

Oct 20 - Oct 21

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

A pair of white front-loading washers in a laundry room with a tiled floor.

14. Days Inn by Wyndham Watertown Fort Drum

Calcium

Robert

NT$2,097

NT$2,328 total

includes taxes & fees

Nov 8 - Nov 9

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

A reception area with a marble counter, pendant lighting, and a tiled floor.

A modern building with a covered entrance, multiple windows, and a parking lot.

15. Quality Inn & Suites Watertown Fort Drum

Calcium

Sherry

NT$1,987

NT$2,206 total

includes taxes & fees

Nov 5 - Nov 6

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

A kitchen with open shelves, a microwave, and a toaster.

A gym with treadmills, a weight machine, and a red exercise ball.

16. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Tara

NT$3,225

NT$3,579 total

includes taxes & fees

Oct 18 - Oct 19

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

A hotel room with a bed, a television, a desk, and a window.

A kitchenette with a coffee maker, a kettle, and a water dispenser. There is a sink and a wheelchair-accessible wheelbarrow.

A hotel room with two beds, a desk, a chair, a TV, and a large mirror.

17. Spark by Hilton Watertown

Watertown

Dianne

NT$2,592

NT$2,877 total

includes taxes & fees

Oct 29 - Oct 30

A marina at night with boats docked, a flag, and a building with a sign.

A marina with several boats docked, outdoor seating with umbrellas, and a flag.

A row of single-story buildings with attached garages, a covered parking area, and a well-lit street at night.

A compact kitchenette with a stove, oven, and a small sink.

18. Hills Motor Court & Marina

Alexandria Bay Downtown

Min

NT$2,442

NT$2,711 total

includes taxes & fees

Oct 18 - Oct 19

A wooden double door with intricate carvings and a sign above stating "ROXY HOTEL EST. 1894".

A hotel corridor with patterned carpet, wooden doors, and beige walls.

A hotel reception area with a wooden desk, a fire alarm, a staircase, and a chandelier.

A hotel hallway with patterned carpet, wooden doors, and a sofa in the background.

19. The Roxy Cape Vincent

Cape Vincent

Debra

NT$4,758

NT$5,281 total

includes taxes & fees

Oct 18 - Oct 19

A room with a bed, a chair, a table, and a lamp.

A bathroom with a bathtub, a shower, and a toilet.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A hotel room with a bed, a desk, a chair, and a small table.

20. Allen's Budget Motel

Watertown

Robert

NT$1,915

NT$2,126 total

includes taxes & fees

Oct 14 - Oct 15

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Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.

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1000 Islands River Rat Cheese

9.2/10 (78 reviews)

This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.

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Thousand Islands Museum

7.8/10 (17 reviews)

This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.

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The Clayton Opera House

8.4/10 (13 reviews)

This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.

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Antique Boat Museum

9.0/10 (72 reviews)

North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.

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Cedar Point State Park

8.4/10 (18 reviews)

Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.

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C-Way Golf Course

7.2/10 (9 reviews)

This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.

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Coyote Moon Vineyards

9.0/10 (37 reviews)

This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.

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Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton

A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Hampton Inn Watertown

8/10 Good

"Room was clean. The bed was on the firmer side. Was supposed to be a Queen but felt more like a double size. Breakfast was typical hotel breakfast. We didn't use any of the amenities as this was a last-minute booking late at night."

Capt.'s Inn & Suites

10/10 Excellent

"This was a lovely property close to downtown Alexandria but far enough away to be quiet and peaceful. The staff was very friendly and helpful. The room was small, but we expected that for the price, and very clean. We would definitely recommend and stay here again."

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

10/10 Excellent

"Room was clean and breakfast was good. Good location."

Capt. Thomson's Resort

8/10 Good

"This is an excellent location straight across from bolt Castle."

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"Clean, comfy and the staff were very helpful. I would definitely recommend this place."

West Winds Motel & Cottages

10/10 Excellent

"It was amazing"

Hotels in Clayton with star-rating

Frequently asked questions

Where is the best place to stay in Clayton?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.

If I need to cancel my hotel reservation in Clayton, will I receive a refund?

Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.

Where can I learn more about changing or cancelling my trip to Clayton?

To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.

What's the best pet-friendly place to stay in Clayton?

West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.

Where is the best hotel to stay near Coyote Moon Vineyards?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.

What about the best place to stay close to Clayton Island Tours?

One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.

What's the best hotel for a golf vacation in Clayton?

Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.

What are some accommodations with pools in Clayton?

1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.

What's the best place to stay near Macdonald-Cartier International Airport (YOW)?

Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.

What's it like to stay in Clayton?

Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. In Clayton, there are 114 hotels and other accommodations to choose from. Find out more about Clayton.

What should I do while I'm visiting Clayton?

Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. A couple of additional sights to add to your agenda are 1000 Islands River Rat Cheese and Clayton Marina. Check out what more to see and do in Expedia's Clayton guide.

What's the weather like in Clayton?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

Explore a world of travel with Expedia

Book Hotels in Clayton on Expedia.com

Find hotels in Clayton, NY

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Clayton

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. Capt. Thomson's Resort

4. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

5. Riveredge Resort

6. Fairfield Inn & Suites Watertown Thousand Islands

7. Bonnie Castle Resort & Marina

8. Hampton Inn Watertown

9. Comfort Inn & Suites Watertown - 1000 Islands

10. Angel Rock Waterfront Cottages and Vacation Homes

11. Hilton Garden Inn Watertown/Thousand Islands

12. Ramada by Wyndham Watertown/Thousand Islands NY

13. Thousand Island Hart House

14. Days Inn by Wyndham Watertown Fort Drum

15. Quality Inn & Suites Watertown Fort Drum

16. Candlewood Suites Watertown Fort Drum by IHG

17. Spark by Hilton Watertown

18. Hills Motor Court & Marina

19. The Roxy Cape Vincent

20. Allen's Budget Motel

Stay near popular Clayton attractions

Grass Point State Park

1000 Islands River Rat Cheese

Thousand Islands Museum

The Clayton Opera House

Antique Boat Museum

Cedar Point State Park

C-Way Golf Course

Coyote Moon Vineyards

Learn more about Clayton

Top Clayton Hotel Reviews

Hampton Inn Watertown

Capt.'s Inn & Suites

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Capt. Thomson's Resort

Hilton Garden Inn Watertown/Thousand Islands

West Winds Motel & Cottages

Hotels in Clayton with star-rating

Frequently asked questions

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