Find Boutique Hotels in San Marcos, CA

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Check availability on San Marcos Boutique Hotels

Our top choices for San Marcos boutique hotels

Deluxe Room, Multiple Beds, Ocean View | Terrace/patio
Pantai Inn

Pantai Inn

Pantai Inn
3.5 star property
Village of La Jolla
9.4 out of 10, Exceptional, (1001)
"It was good location and ocean view."
United States
Insook
The price is NT$7,767
NT$9,637 total
includes taxes & fees
Dec 16 - Dec 17
Pantai Inn
2 restaurants, breakfast, lunch, dinner served; Modern European cuisine
La Valencia Hotel

La Valencia Hotel

La Valencia Hotel
4.0 star property
Village of La Jolla
8.6 out of 10, Excellent, (1002)
"Hotel is super cool, friendly staff, Whaling Bar is excellent."
United Kingdom
Nick
La Valencia Hotel
Exterior
Scripps Inn La Jolla Cove

Scripps Inn La Jolla Cove

Scripps Inn La Jolla Cove
3.5 star property
Village of La Jolla
9.2 out of 10, Wonderful, (913)
"The room was great and had a great view of the ocean. "
United States
Christine
Scripps Inn La Jolla Cove
Outdoor pool, pool umbrellas
The Lodge at Torrey Pines

The Lodge at Torrey Pines

The Lodge at Torrey Pines
5.0 star property
Torrey Pines
9.2 out of 10, Wonderful, (880)
"Great stay"
United States
Joshua Steven
The price is NT$12,701
NT$16,782 total
includes taxes & fees
Jan 3 - 2026/1/4
The Lodge at Torrey Pines
Exterior
L'Auberge Del Mar

L'Auberge Del Mar

L'Auberge Del Mar
5.0 star property
Del Mar
8.8 out of 10, Excellent, (826)
"The location was beautiful. Staff was very friendly."
United States
Quynh N
The price is NT$11,823
NT$15,524 total
includes taxes & fees
Dec 17 - Dec 18
L'Auberge Del Mar
Exterior
Inn At Rancho Santa Fe

Inn At Rancho Santa Fe

Inn At Rancho Santa Fe
5.0 star property
Covenant
9.4 out of 10, Exceptional, (133)
"Very nice stay"
United States
Anonymous traveler
The price is NT$14,006
NT$15,660 total
includes taxes & fees
Dec 18 - Dec 19
Inn At Rancho Santa Fe
Fitness facility
Rancho Valencia Resort and Spa

Rancho Valencia Resort and Spa

Rancho Valencia Resort and Spa
5.0 star property
Rancho Santa Fe
9.8 out of 10, Exceptional, (138)
"It was a perfect get away for our anniversary!"
United States
Sam
The price is NT$34,282
NT$39,431 total
includes taxes & fees
Dec 16 - Dec 17
Rancho Valencia Resort and Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Marcos Hotel Reviews

Inn By The Sea La Jolla

Inn By The Sea La Jolla

10/10 Excellent
"A very sweet hotel in an amazing location. We stay-vacationed when our house was being tented for termite treatment and enjoyed the experience and plan do a repeat next year!"
Julie 2-night trip
Posted 3 days ago
Inn By The Sea La Jolla

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Frequently asked questions

What's there to see and do in San Marcos?
The beaches, shopping, and lakefront are just some of the things to enjoy while you're in the area. Activities and attractions to experience around San Marcos include LEGOLAND® California, San Diego Zoo Safari Park, and Twin Oaks Golf Club. Some other things you might want to enjoy include California Center For The Arts, GIA Museum, and Belly Up.
What kind of weather should I plan for when I travel to San Marcos?
Having a good idea of the weather in San Marcos will help you enjoy your stay to the fullest. The hottest months are usually August and September with an average temp of 71°F, while the coldest months are February and January with an average of 55°F. Average annual precipitation for San Marcos is 14 inches.
What's the best way to get to my boutique hotel in San Marcos?
You have a few options for getting to and around San Marcos. The closest major airport is Carlsbad, CA (CLD-McClellan-Palomar), which is located 6.6 mi (10.7 km) from the heart of the city, but San Diego, CA (MYF-Montgomery Field) may also be an option. If you'd like to venture out around the area, consider renting a car to take in more sights.