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Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,171 reviews)
"Great location and friendly staff "
United States
jim
The price is NT$5,860
NT$7,468 total
includes taxes & fees
Apr 5 - Apr 6
The Dana on Mission Bay

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,459 reviews)
"Beautiful resort great customer service. I would highly recommend staying here."
United States
Kevin
The price is NT$7,231
NT$9,997 total
includes taxes & fees
Apr 5 - Apr 6
Paradise Point Resort & Spa

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,377 reviews)
"Clean room, excellent friendly staff, comfortable beds"
Canada
Shauna
The price is NT$7,639
NT$10,471 total
includes taxes & fees
Apr 5 - Apr 6
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,613 reviews)
"Wonderful place to stay, especially with kiddos. The breakfast package is a must and an ocean view room really puts the whole vibe above and w"
United States
James
The price is NT$6,433
NT$9,080 total
includes taxes & fees
Apr 5 - Apr 6
Hyatt Regency Mission Bay Spa and Marina

Embassy Suites by Hilton San Diego La Jolla

Embassy Suites by Hilton San Diego La Jolla
4.0 star property
11 km from Mission Bay
8.8 out of 10, Excellent, (1,889 reviews)
"Very clean property, nice location. Breakfast was great. "
United States
Vicki
The price is NT$5,712
NT$7,473 total
includes taxes & fees
Mar 29 - Mar 30
Embassy Suites by Hilton San Diego La Jolla

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (738 reviews)
"Breakfast area was very nice"
United States
Heidi
The price is NT$4,952
NT$5,692 total
includes taxes & fees
Mar 29 - Mar 30
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,727 reviews)
"Great location for the airport stay"
United States
Christopher
The price is NT$5,538
NT$6,365 total
includes taxes & fees
Mar 22 - Mar 23
Hampton Inn & Suites San Diego Airport Liberty Station

Inn By The Sea La Jolla

Inn By The Sea La Jolla
3.5 star property
9.1 km from Mission Bay
9.4 out of 10, Exceptional, (1,781 reviews)
"Staff was wonderful, room was comfortable, walking distance to great dining and La Jolla cove."
United States
lisa
The price is NT$6,372
NT$7,324 total
includes taxes & fees
Mar 23 - Mar 24
Inn By The Sea La Jolla

Empress Hotel of La Jolla

Empress Hotel of La Jolla
3.0 star property
9 km from Mission Bay
9.0 out of 10, Wonderful, (999 reviews)
"Very nice hotel, very convenient and beautiful area"
United States
Bobby
The price is NT$6,623
NT$8,164 total
includes taxes & fees
Apr 20 - Apr 21
Empress Hotel of La Jolla

Berkshire Motor Hotel

Berkshire Motor Hotel
2.5 star property
North Park, 8.3 km from Mission Bay
8.4 out of 10, Very Good, (1,000 reviews)
"Clean, very chill easy check in"
United States
Susana
The price is NT$3,150
NT$3,552 total
includes taxes & fees
Mar 25 - Mar 26
Berkshire Motor Hotel

The Shoal La Jolla Beach

The Shoal La Jolla Beach
2.5 star property
7.8 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"Amazing staff and facilities!!! Highly recommended!!! Close to all the good restaurants as well "
United States
Johnny
The price is NT$5,856
NT$6,614 total
includes taxes & fees
Apr 19 - Apr 20
The Shoal La Jolla Beach

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 5.4 km from Mission Bay
9.2 out of 10, Wonderful, (1,000 reviews)
"Garden was beautiful, pool was a nice 90 degrees and very clean. "
United States
Ethan
The price is NT$6,867
NT$7,742 total
includes taxes & fees
Mar 22 - Mar 23
The Inn at Sunset Cliffs

Courtyard by Marriott San Diego Central

Courtyard by Marriott San Diego Central
3.0 star property
9.3 km from Mission Bay
8.6 out of 10, Excellent, (1,004 reviews)
"Was a great hotel that was decorated perfectl. "
United States
Thomas
The price is NT$4,120
NT$4,735 total
includes taxes & fees
Apr 5 - Apr 6
Courtyard by Marriott San Diego Central

Courtyard by Marriott San Diego Downtown Little Italy

Courtyard by Marriott San Diego Downtown Little Italy
4.0 star property
Little Italy, 8.1 km from Mission Bay
9.0 out of 10, Wonderful, (436 reviews)
"Nice room, great location, "
United States
Juan Carlos Ramirez
The price is NT$3,996
NT$4,633 total
includes taxes & fees
Apr 5 - Apr 6
Courtyard by Marriott San Diego Downtown Little Italy

La Quinta Inn & Suites by Wyndham San Diego Mission Bay

La Quinta Inn & Suites by Wyndham San Diego Mission Bay
3.0 star property
North Pacific Beach, 3.5 km from Mission Bay
8.0 out of 10, Very Good, (1,492 reviews)
"Very nice place , room was clean and the staff very friendly and helpful. Breakfast was good to start the day. "
United States
Sonia
The price is NT$3,783
NT$4,350 total
includes taxes & fees
Apr 5 - Apr 6
La Quinta Inn & Suites by Wyndham San Diego Mission Bay

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
5.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,430 reviews)
"Amazing property and staff!!"
United States
Victor
The price is NT$6,160
NT$7,081 total
includes taxes & fees
Apr 7 - Apr 8
Homewood Suites by Hilton San Diego Airport/Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
5.9 km from Mission Bay
8.6 out of 10, Excellent, (1,002 reviews)
"Great location with Key West-like classic charm. "
United States
Matthew
Sea Harbor Hotel

Pantai Inn

Pantai Inn
3.5 star property
9.4 km from Mission Bay
9.4 out of 10, Exceptional, (1,001 reviews)
"Fantastic experience overall and the breakfast was amazing"
United States
Chris
The price is NT$11,675
NT$14,061 total
includes taxes & fees
Mar 23 - Mar 24
Pantai Inn

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.6 out of 10, Excellent, (1,774 reviews)
"Great breakfast, comfortable room. "
United States
Rebecca
The price is NT$3,868
NT$4,438 total
includes taxes & fees
Apr 6 - Apr 7
Best Western Yacht Harbor Hotel

Ocean Beach Hotel

Ocean Beach Hotel
3.0 star property
Ocean Beach, 4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,284 reviews)
"Friendly staff, clean room, close to the beach & downtown, convenient parking -- we'll be back!"
United States
Violet
Ocean Beach Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Dog Beach and Sunset Cliffs Natural Park, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on Expedia customer reviews, Paradise Point Resort & Spa is the highest ranked property in Mission Bay. This resort offers a marina and 5 outdoor pools. Other favorite options in the area include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighborhood. Mission Beach, North Cove Beach, and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.